Name: Jing Gong (龚警)
Gender: Male
City: Beijing, China
2011 - 2015, College of Life Science & Technology, Huazhong University of Science and Technology, China, B. D.
2015 - current, School of Life Sciences, Tsinghua University, China, Ph. D. candidate
Biology:
Molecular biology (basic)
Next generation sequencing (basic)
Bioinformatics (familiar)
Programming
Linux (familiar): shell, awk, sed, grep
Python (familiar): data cleaning and visualisation
R (basic): data cleaning and visualisation
MySQL (basic): create database, and basic query
HTML/JavaScript (basic): create static or interactive page with some common elements
Statistics & machine learning (basic)
My study focus on RNA molecules, major including RNA secondary structure and RNA-RNA interactions. By combination of next generation sequencing and computational analysis, I aim to disect the underlying regulatory roles of RNAs.
Boyang Shi*, Jinsong Zhang*, Jian Heng*, Jing Gong*, Ting Zhang, Pan Li, Bao-Fa Sun, Ying Yang, Ning Zhang, Yong-Liang Zhao, Hai-Lin Wang, Feng Liu#, Qiangfeng Cliff Zhang#, Yun-Gui Yang#. RNA structural dynamics regulates early embryogenesis through controlling transcriptome fate and function. Genome Biology. 2020 PDF
Xiaocheng Weng*, Jing Gong*, Yi Chen*, Tong Wu*, Fang Wang, Shixi Yang, Yushu Yuan, Guanzheng Luo, Kai Chen, Lulu Hu, Honghui Ma, Pingluan Wang, Qiangfeng Cliff Zhang#, Xiang Zhou# and Chuan He#. Keth-seq for transcriptome-wide RNA structure mapping. Nature Chemical Biology. 2020 PDF
Ying Liu*, Yajing Fu*, Qian Wang, Mushan Li, Zheng Zhou, Deemah Dabbagh, Chunyan Fu, Hang Zhang, Shuo Li, Tengjiang Zhang, Jing Gong, Xiaohui Kong, Weiwei Zhai, Jiaming Su, Jianping Sun, Yonghong Zhang, Xiao-Fang Yu, Zhen Shao, Feng Zhou#, Yuntao Wu# and Xu Tan#. Proteomic profiling of HIV-1 infection of human CD4+ T cells identifies PSGL-1 as an HIV restriction factor. Nature Microbiology. 2019 PDF
Yanyan Ju*, Jing Gong*, Yucheng T. Yang#, and Qiangfeng Cliff Zhang#. Investigation of RNA‐RNA Interactions Using The RISE Database. Current protocols in bioinformatics. 2018 PDF
Jing Gong*, Yanyan Ju*, Di Shao and Qiangfeng Cliff Zhang#. Advances and challenges towards the study of RNA-RNA interactions in a transcriptome-wide scale. Quantitative Biology. 2018 PDF
Zhipeng Lu, Jing Gong, Qiangfeng Cliff Zhang#. PARIS: Psoralen Analysis of RNA Interactions and Structures with High Throughput and Resolution. RNA Detection. 2018 PDF
Jing Gong*, Di Shao*, Kui Xu, Zhipeng Lu, Zhi John Lu, Yucheng T. Yang#, and Qiangfeng Cliff Zhang#. RISE: a database of RNA interactome from sequencing experiments. Nucleic Acids Res. 2018 PDF
Li Fu*, #, Yan-Ru Qin*, Xiao-Yan Ming*, Xian-Bo Zuo*, Yu-Wen Diao*, Li-Yi Zhang, Jiaoyu Ai, Bei-Lei Liu, Tu-Xiong Huang, Ting-Ting Cao, Bin-Bin Tan, Di Xiang, Chui-Mian Zeng, Jing Gong, Qiangfeng Zhang, Sui-Sui Dong, Juan Chen, Haibo Liu, Jian-Lin Wu, Robert Z. Qi, Dan Xie, Li-Dong Wang and Xin-Yuan Guan#. RNA editing of SLC22A3 drives early tumor invasion and metastasis in familial esophageal cancer. Proc Natl Acad Sci U S A. 2017 PDF
贺选, 龚警, 王超颖, 汤欣祎, 夏炎枝#. 应用aCGH技术对胎儿染色体大片段重复进行产前诊断. 中国现代医学杂志. 2015 PDF
(* Co-first authorship, # Corresponding authorship)